File Name: molecular networks as sensors and drivers of common human diseases .zip
- Agent-based model
- Molecular networks as sensors and drivers of common human diseases
- A Genetic Model of the Connectome
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Complex diseases are caused by a combination of genetic and environmental factors. Uncovering the molecular pathways through which genetic factors affect a phenotype is always difficult, but in the case of complex diseases this is further complicated since genetic factors in affected individuals might be different. In recent years, systems biology approaches and, more specifically, network based approaches emerged as powerful tools for studying complex diseases.
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In recent years gene regulatory networks GRNs have attracted a lot of interest and many methods have been introduced for their statistical inference from gene expression data. However, despite their popularity, GRNs are widely misunderstood. For this reason, we provide in this paper a general discussion and perspective of gene regulatory networks. Specifically, we discuss their meaning, the consistency among different network inference methods, ensemble methods, the assessment of GRNs, the estimated number of existing GRNs and their usage in different application domains. Furthermore, we discuss open questions and necessary steps in order to utilize gene regulatory networks in a clinical context and for personalized medicine. About 15 years ago inference of large-scale gene regulatory networks GRNs was made possible thanks to the availability of high-throughput gene expression data. Within this time, many different methods have been developed Liang et al.
Molecular networks as sensors and drivers of common human diseases
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An agent-based model ABM is a class of computational models for simulating the actions and interactions of autonomous agents both individual or collective entities such as organizations or groups with a view to assessing their effects on the system as a whole. It combines elements of game theory , complex systems , emergence , computational sociology , multi-agent systems , and evolutionary programming. Monte Carlo methods are used to introduce randomness. A review of recent literature on individual-based models, agent-based models, and multiagent systems shows that ABMs are used on non-computing related scientific domains including biology , ecology and social science. Agent-based models are a kind of microscale model  that simulate the simultaneous operations and interactions of multiple agents in an attempt to re-create and predict the appearance of complex phenomena. The process is one of emergence , which some express as "the whole is greater than the sum of its parts".
disease severity. In the context of common human diseases, the disease. states can be considered emergent properties of molecular networks.
A Genetic Model of the Connectome
Skip to search form Skip to main content You are currently offline. Some features of the site may not work correctly. DOI: Schadt Published Biology, Medicine Nature.
Due to the large interdependence between the molecular components of living systems, many phenomena, including those related to pathologies, cannot be explained in terms of a single gene or a small number of genes. Molecular networks, representing different types of relationships between molecular entities, embody these large sets of interdependences in a framework that allow their mining from a systemic point of view to obtain information. These networks, often generated from high-throughput omics datasets, are used to study the complex phenomena of human pathologies from a systemic point of view. Complementing the reductionist approach of molecular biology, based on the detailed study of a small number of genes, systemic approaches to human diseases consider that these are better reflected in large and intricate networks of relationships between genes.
По мере того как они удалялись от двери, свет становился все более тусклым, и вскоре они оказались в полной темноте. Единственным освещением в шифровалке был разве что свет звезд над их головами, едва уловимое свечение проникало также сквозь разбитую стеклянную стену Третьего узла. Стратмор шагнул вперед, нащупывая ногой место, где начинались ступеньки узенькой лестницы. Переложив берет-ту в левую руку, правой он взялся за перила.
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